biblio

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Book Chapter
D. Sengupta, G. Kumar, A., Prasanna, X., and Chattopadhyay, A., Chapter 5: Experimental and computational approaches to study membranes and lipid-protein interactions, in Computational biophysics of membrane proteins, Royal Society of Chemistry, 2017, pp. 137-160.
D. Sengupta, Sonar, K., and Joshi, M., Characterizing clinically relevant natural variants of GPCRs using computational approaches, in Methods in cell biology, 2017.
X. Prasanna, Chattopadhyay, A., and Sengupta, D., Role of lipid-mediated effects in beta(2)-adrenergic receptor dimerization, in biochemical roles of eukaryotic cell surface macromolecules, vol. 842, A. Chakrabarti and Surolia, A., Eds. Heidelberger Platz 3, D-14197 Berlin, Germany : Springer-Verlag Berlin, 2015, pp. 247-261.
D. Sengupta, Joshi, M., Athale, C. A., and Chattopadhyay, A., What can simulations tell us about GPCRs: integrating the scales, in G Protein-Coupled Receptors: Signaling, Trafficking and Regulation, vol. 132, A. K. Shukla, Ed. 525 B Street, Suite 1900, San Diego, CA 92101-4495 USA : Elsevier Academic Press Inc., 2016, pp. 429-452.
Journal Article
X. Prasanna, Chattopadhyay, A., and Sengupta, D., Cholesterol modulates the dimer interface of the beta(2)-adrenergic receptor via cholesterol occupancy sites, Biophysical Journal, vol. 106, no. 6, pp. 1290-1300, 2014.
D. Sengupta, Cholesterol modulates the structure, binding modes, and energetics of caveolin-membrane interactions, Journal of Physical Chemistry B, vol. 116, no. 50, pp. 14556-14564, 2012.
X. Prasanna, Sengupta, D., and Chattopadhyay, A., Cholesterol-dependent conformational plasticity in GPCR dimers, Scientific Reports, vol. 6, p. 31858, 2016.
D. Sengupta, Prasanna, X., and Chattopadhyay, A., Conformational dynamics of GPCR dimers is dependent on membrane cholesterol, Biophysical Journal, vol. 110, no. 3, p. 356A-356A, 2016.
S. M. Patra, Chakraborty, S., Shahane, G., Prasanna, X., Sengupta, D., Maiti, P. K., and Chattopadhyay, A., Differential dynamics of the serotonin(1A) receptor in membrane bilayers of varying cholesterol content revealed by all atom molecular dynamics simulation, Molecular Membrane Biology, vol. 32, no. 4, pp. 127-137, 2015.
G. Moiset, Cirac, A. D., Stuart, M. C. A., Marrink, S. - J., Sengupta, D., and Poolman, B., Dual action of BPC194: a membrane active peptide killing bacterial cells, Plos One, vol. 8, no. 4, p. e61541, 2013.
A. S. Sandholu, Mohole, M., Duax, W. L., Thulasiram, H. V., Sengupta, D., and Kulkarni, K., Dynamics of loops at the substrate entry channel determine the specificity of iridoid synthases, Febs Letters, vol. 592, no. 15, pp. 2624-2635, 2018.
A. B. Pawar, Prasanna, X., and Sengupta, D., Effect of lipid bilayer composition on membrane protein association, Advances in Planar Lipid Bilayers and Liposomes, vol. 22, pp. 43–63, 2015.
A. Pawar and Sengupta, D., Effect of membrane composition on receptor association: implications of cancer lipidomics on ErbB receptors, Journal of Membrane Biology, vol. 251, no. 3, pp. 359-368, 2018.
V. Dubey, Prasanna, X., and Sengupta, D., Estimating the lipophobic contributions in model membranes, Journal of Physical Chemistry B, vol. 121, no. 9, pp. 2111-2120, 2017.
D. Sengupta, Prasanna, X., Mohole, M., and Chattopadhyay, A., Exploring GPCR lipid interactions by molecular dynamics simulations: excitements, challenges, and the way forward, Journal of Physical Chemistry B, vol. 122, no. 22, pp. 5727-5737, 2018.
X. Prasanna, Jafurulla, M., Sengupta, D., and Chattopadhyay, A., Ganglioside GM1 interacts with the serotonin1A receptor via the sphingolipid binding domain, Biochimica et Biophysica Acta, vol. 1858, no. 11, pp. 2818-2826, 2016.
T. A. Wassenaar, Pluhackova, K., Moussatova, A., Sengupta, D., Marrink, S. - J., D. Tieleman, P., and Boeckmann, R. A., High-throughput simulations of dimer and trimer assembly of membrane proteins. the DAFT approach, Journal of Chemical Theory and Computation, vol. 11, no. 5, pp. 2278-2291, 2015.
D. Sengupta and Chattopadhyay, A., Identification of cholesterol binding sites in the serotonin(1A) receptor, Journal of Physical Chemistry B, vol. 116, no. 43, pp. 12991-12996, 2012.
A. Krishna and Sengupta, D., Interplay between membrane curvature and cholesterol: role of palmitoylated caveolin-1, Biophysical Journal, vol. 116, no. 1, pp. 69-78, 2019.
T. A. Wassenaar, Pluhackova, K., Moussatova, A., Sengupta, D., Marrink, S. - J., D. Tieleman, P., and Boeckmann, R. A., Landscapes of membrane protein interactions from high-throughput MD simulations using the daft approach, Biophysical Journal, vol. 108, no. 2, p. 526A-526A, 2015.
S. Kharche, Joshi, M., Sengupta, D., and Chattopadhyay, A., Membrane-induced organization and dynamics of the N-terminal domain of chemokine receptor CXCR1: insights from atomistic simulations, Chemistry and Physics of Lipids, vol. 210, pp. 142-148, 2018.
D. Sengupta and Chattopadhyay, A., Molecular dynamics simulations of GPCR-cholesterol interaction: an emerging paradigm, Biochimica Et Biophysica Acta-Biomembranes, vol. 1848, no. 9, pp. 1775-1782, 2015.
G. Shahane, Parsania, C., Sengupta, D., and Joshi, M., Molecular Insights into the dynamics of pharmacogenetically important N-terminal variants of the human beta(2)-adrenergic receptor, Plos Computational Biology, vol. 10, no. 12, p. e1004006, 2014.